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	<title>Teaching with Technology &#187; Biology</title>
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	<link>http://sites.middlebury.edu/teachwithtech</link>
	<description>Co-sponsored by the CTLR and LIS @ Middlebury</description>
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		<title>Course Hub Case Studies</title>
		<link>http://sites.middlebury.edu/teachwithtech/2011/12/01/course-hub-case-studies/</link>
		<comments>http://sites.middlebury.edu/teachwithtech/2011/12/01/course-hub-case-studies/#comments</comments>
		<pubDate>Thu, 01 Dec 2011 22:59:54 +0000</pubDate>
		<dc:creator>Alex Chapin</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Film & Media Culture]]></category>
		<category><![CDATA[Literary Studies]]></category>
		<category><![CDATA[Political Science]]></category>
		<category><![CDATA[blogs]]></category>
		<category><![CDATA[Course Hub]]></category>
		<category><![CDATA[Moodle]]></category>
		<category><![CDATA[WordPress]]></category>

		<guid isPermaLink="false">http://sites.middlebury.edu/teachwithtech/?p=583</guid>
		<description><![CDATA[The Course Hub is a meta-platform for aggregating resources for a given course across a variety of platforms including WordPress and Moodle.  Below is a screencast showing how the Course Hub has been used in courses this fall.]]></description>
				<content:encoded><![CDATA[<p>The Course Hub is a meta-platform for aggregating resources for a given course across a variety of platforms including WordPress and Moodle.  Below is a screencast showing how the Course Hub has been used in courses this fall.</p>
<p style="text-align: center;"><video width="400" height="254" controls="true" poster="http://middmedia.middlebury.edu/media/achapin/splash/course-hub-case-studies01.jpg"><source src="http://middmedia.middlebury.edu/media/achapin/mp4/course-hub-case-studies01.mp4" type='video/mp4; codecs="avc1.42E01E, mp4a.40.2"' /><source src="http://middmedia.middlebury.edu/media/achapin/webm/course-hub-case-studies01.webm" type='video/webm; codecs="vp8, vorbis"' /><object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=10,0,0,0" width="400" height="254"><param name="movie" value="http://middmedia.middlebury.edu/strobe_mp/StrobeMediaPlayback.swf"></param><param name="FlashVars" value="src=http://middmedia.middlebury.edu/media/achapin/mp4/course-hub-case-studies01.mp4&poster=http%3A%2F%2Fmiddmedia.middlebury.edu%2Fmedia%2Fachapin%2Fsplash%2Fcourse-hub-case-studies01.jpg"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://middmedia.middlebury.edu/strobe_mp/StrobeMediaPlayback.swf" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="400" height="254" FlashVars="src=http://middmedia.middlebury.edu/media/achapin/mp4/course-hub-case-studies01.mp4&poster=http%3A%2F%2Fmiddmedia.middlebury.edu%2Fmedia%2Fachapin%2Fsplash%2Fcourse-hub-case-studies01.jpg"></embed></object></video></p>
<p style="text-align: left;">
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		<title>Clickers in a large lecture class &#8211; Catherine Combelles</title>
		<link>http://sites.middlebury.edu/teachwithtech/2010/06/17/clickers-in-a-large-lecture-class-catherine-combelles/</link>
		<comments>http://sites.middlebury.edu/teachwithtech/2010/06/17/clickers-in-a-large-lecture-class-catherine-combelles/#comments</comments>
		<pubDate>Thu, 17 Jun 2010 18:54:49 +0000</pubDate>
		<dc:creator>Carrie Macfarlane</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Discussion]]></category>
		<category><![CDATA[Feedback]]></category>
		<category><![CDATA[Formative Assessment]]></category>
		<category><![CDATA[clickers]]></category>
		<category><![CDATA[polling]]></category>

		<guid isPermaLink="false">http://sites.middlebury.edu/teachwithtech/?p=451</guid>
		<description><![CDATA[What: Clickers (personal polling devices) in a large lecture class Who: Catherine Combelles, Assistant Professor of Biology Class: BIOL0145 Cell Biology and Genetics Technology Used: Personal Polling Devices (Clickers) Number of students: approx. 70 Learning objective: To monitor the students’ &#8230; <a href="http://sites.middlebury.edu/teachwithtech/2010/06/17/clickers-in-a-large-lecture-class-catherine-combelles/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
				<content:encoded><![CDATA[<p><strong><a href="http://sites.middlebury.edu/teachwithtech/files/2010/06/clicker2.jpg"><img class="alignleft" title="clicker2" src="http://sites.middlebury.edu/teachwithtech/files/2010/06/clicker2-60x150.jpg" alt="" width="60" height="150" /></a>What:</strong> <a href="http://www.middlebury.edu/offices/technology/ct/tools/clickers" target="_blank">Clickers (personal polling devices)</a> in a large lecture class</p>
<p><strong>Who:</strong> Catherine Combelles, Assistant Professor of Biology</p>
<p><strong>Class:</strong> BIOL0145 Cell Biology and Genetics</p>
<p><strong>Technology Used:</strong> Personal Polling Devices (Clickers)</p>
<p><strong>Number of students:</strong> approx. 70</p>
<p><strong>Learning objective: </strong> To monitor the students’ understanding of concepts covered in lecture and promote peer learning and discussion.</p>
<p><strong>Description of use:</strong> Catherine used the clickers for every lecture from day 1 to the last day of classes, and throughout the duration of each lecture. At the beginning of each lecure, she started with a question that tested their understanding of concepts from the past lecture or on their readings for the day. She would then pose between 3-4 more questions depending on the lecture content that day.<span id="more-451"></span></p>
<p>All of Catherine&#8217;s questions were prepared beforehand; she never created questions on the fly (although she would like to play with that in the future). She sometimes skipped a question if it became clear that it was not needed based on the students’ understanding. But typically, she asked all of the questions she had prepared. She would pose a question, let students answer on their own, then show the class how all students answered before showing the correct answer. If the answers were too spread out, without satisfactory agreement throughout the class, Catherine would have the students talk among themselves and convince their peers of their choice before re-answering. During the students’ discussion, she would walk around, listen, gauge what the learning issues may have been and answer or prompt further questions.  With the help of this peer learning, the goal was to get most of the class to re-answer correctly.</p>
<p>Catherine says that the toughest part in all of this was writing good questions. Otherwise, she felt it was a fantastic way to pace the lecture, break at key points, check on students’ understanding before moving on, and trigger discussion on tougher questions that might be subject to interpretation.</p>
<p><strong>Assessment: </strong>This technology proved very effective and helpful. Catherine will use the clickers again next year. Students responded positively to clicker use in their evaluations.  They reported that the clickers were a fun way to stay engaged in lecture, raise quesitons and keep up with the material. There were criticisms about the quality of some of the questions, but the overwhelming feedback Catherine received was to continue using them.</p>
<p>This technology could potentially be used in a variety of lecture courses.  Catherine would be happy to be approached by anyone that would like to learn more about them.</p>
<h3>Technologies</h3>
<p><a href="http://www.middlebury.edu/offices/technology/ct/uses">How Do I&#8230;</a> » <a href="/offices/technology/ct/uses/data_collection">Data Collection and Analysis</a> » <a href="http://www.middlebury.edu/offices/technology/ct/uses/data_collection/surveying">Survey/Polls</a></p>
<p><a href="http://www.middlebury.edu/offices/technology/ct/tools">Tools</a> » <a href="http://www.middlebury.edu/offices/technology/ct/tools/clickers">Clickers</a></p>
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		<title>Evolution Simulation Model &#8212; Matt Landis</title>
		<link>http://sites.middlebury.edu/teachwithtech/2010/06/16/evolution-simulation-model-matt-landis/</link>
		<comments>http://sites.middlebury.edu/teachwithtech/2010/06/16/evolution-simulation-model-matt-landis/#comments</comments>
		<pubDate>Wed, 16 Jun 2010 15:46:20 +0000</pubDate>
		<dc:creator>Carrie Macfarlane</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Modelling]]></category>
		<category><![CDATA[simulation]]></category>

		<guid isPermaLink="false">http://sites.middlebury.edu/teachwithtech/?p=308</guid>
		<description><![CDATA[Technology used: NetLogo Course: BIOL0140 Ecology and Evolution Learning objective: Allow students to experimentally investigate evolution through a computer simulation Reason for using the technology: After using EcoBeaker in their labs for several years, Professor Matt Landis and his colleagues &#8230; <a href="http://sites.middlebury.edu/teachwithtech/2010/06/16/evolution-simulation-model-matt-landis/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
				<content:encoded><![CDATA[<p><a rel="http://sites.middlebury.edu/teachwithtech/files/2010/04/finch-evolution-screenshot01.png" href="http://sites.middlebury.edu/teachwithtech/files/2010/04/finch-evolution-screenshot01.png" target="_blank"><img class="size-full wp-image-318 alignright" title="moz-screenshot-9-30p" src="http://sites.middlebury.edu/teachwithtech/files/2010/03/moz-screenshot-9-30p1.jpg" alt="Evolution Simulation Model" width="231" height="245" /></a><br />
<strong>Technology used: </strong><a href="http://ccl.northwestern.edu/netlogo/" target="_blank">NetLogo</a><br />
<strong>Course:</strong> BIOL0140 Ecology and Evolution<br />
<strong>Learning objective:</strong> Allow students to experimentally investigate evolution through a computer simulation<br />
<strong>Reason for using the technology:</strong> After using EcoBeaker in their labs for several years, Professor Matt Landis and his colleagues wanted to try a different simulation model. Because EcoBeaker is proprietary software, the instructors weren’t able to answer students’ questions about how the model worked. They also weren’t able to fix software bugs.  Using NetLogo allowed Matt to build and modify the model to directly address pedagogical needs.<span id="more-308"></span><br />
<strong>Description</strong>: Matt used NetLogo, a free programmable modeling environment, to build a model of a finch population on Daphne Major, an island in the Galapagos.  Try it yourself <a href="http://cr.middlebury.edu/biology/landis/finch-evolution/finch-two-weather-patterns.html" target="_blank">here</a> (works best with recent versions of Firefox).  Matt and the other BIOL0140 instructors have used this model for two years in a lab entitled “Computer Simulations and Evolution of Darwin’s Finches.”</p>
<p>The “Computer Simulations and Evolution of Darwin’s Finches” lab lasts for 3 weeks. In the first week, students form groups, familiarize themselves with the model and choose a topic. For example, they might decide to test how well genetically diverse populations withstand environmental variation. The students will develop a hypothesis, load the model on a computer, adjust the weather with a slider bar, and watch for changes in the population over hundreds of years. In the second week, the students meet with their instructors to refine their topics and review their results. In the third week, they present their findings to the rest of the class.</p>
<p>Matt learned NetLogo on his own. He worked from a model that he had created using other software, and he adapted the lab assignments from an EcoBeaker lab. The NetLogo site has a collection of samples that demonstrate other potential applications of the technology, including chemistry (polymer dynamics), political science (voting patterns), and public health (epidemiology).</p>
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		<title>Campus Tree Map &#8211; Tim Parsons</title>
		<link>http://sites.middlebury.edu/teachwithtech/2010/06/16/campus-tree-map-tim-parsons/</link>
		<comments>http://sites.middlebury.edu/teachwithtech/2010/06/16/campus-tree-map-tim-parsons/#comments</comments>
		<pubDate>Wed, 16 Jun 2010 14:40:34 +0000</pubDate>
		<dc:creator>Carrie Macfarlane</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Geography]]></category>
		<category><![CDATA[Modelling]]></category>
		<category><![CDATA[databases]]></category>
		<category><![CDATA[GIS]]></category>
		<category><![CDATA[Google Earth]]></category>
		<category><![CDATA[GPS]]></category>
		<category><![CDATA[metadata]]></category>
		<category><![CDATA[simulation]]></category>
		<category><![CDATA[spreadsheets]]></category>

		<guid isPermaLink="false">http://sites.middlebury.edu/teachwithtech/?p=381</guid>
		<description><![CDATA[What:  Campus Tree Map Who: Tim Parsons, Horticulturalist Technologies used: Hardware: Dell Axim Handheld PC with a Bluetooth GPS; Software: Handheld PC running ArcPad; Desktop: ArcEditor, ArcPad, ArcPad Application Builder, Microsoft Excel, Access, and Visual Studio, Google Earth and Picassa &#8230; <a href="http://sites.middlebury.edu/teachwithtech/2010/06/16/campus-tree-map-tim-parsons/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
				<content:encoded><![CDATA[<p><a href="http://sites.middlebury.edu/teachwithtech/files/2010/04/treemapAll1.jpg"><img class="alignleft size-thumbnail wp-image-387" style="margin: 5px" title="treemapAll" src="http://sites.middlebury.edu/teachwithtech/files/2010/04/treemapAll1-150x150.jpg" alt="treemapAll" width="150" height="150" /></a><strong> </strong></p>
<p><strong>What:  <a href="http://sites.middlebury.edu/middland/treemap/" target="_blank">Campus   Tree Map</a></strong></p>
<p><strong>Who: </strong>Tim Parsons, Horticulturalist<strong><br />
</strong></p>
<p><strong></strong><strong>Technologies used:</strong> Hardware: Dell Axim Handheld PC with a Bluetooth GPS; Software: Handheld PC running ArcPad; Desktop: ArcEditor, ArcPad, ArcPad Application Builder, Microsoft Excel, Access, and Visual Studio, Google Earth and Picassa 3.</p>
<p><strong>Assistance Received:</strong> Tim received assistance with ArcGIS from Bill Hegman, GIS Specialist; and Katie Clagett and Chris Rodgers, former GIS Interns at LIS.  He also received some help from students in the Geography Department&#8217;s computer lab.</p>
<p><strong>Courses:</strong> BIOL 1003, Trees and the Urban Forest, and other classes in the Biology Department.<span id="more-381"></span><br />
<!--more--></p>
<p><strong>Reasons for using the Technology: </strong>The tree map is used primarily as a management tool but it has been central to a number of curricular projects as well.  The map is viewable in Google Earth.  Many commercial software packages are available for urban forest management, but they cost thousands of dollars and are not open enough for sharing data.</p>
<p>All of the urban campus trees (trees managed as individuals) are mapped.  In classes, the map is used by students interested in finding and/or analyzing tree species.  In Facilities Management, the map is used to track tree maintenance and health issues, for example pruning and insect problems.  See <a href="http://sites.middlebury.edu/middland/2010/03/02/campus-tree-map-updated/" target="_blank">Campus Tree Map Updated</a> in <a href="http://sites.middlebury.edu/middland/" target="_blank">The Middlebury Landscape blog</a> for details.</p>
<p>In Tim&#8217;s Urban Forest class, his students took the tree population and ran it through modeling software called <a href="http://www.itreetools.org/" target="_blank">iTree</a> to look at carbon sequestration, pollution abatement, etc.  Students in other classes have used the map for tree identification.  For example, a student recently contacted Tim because she was looking for Cherry trees to evaluate for a plant community ecology class.</p>
<p><strong>Learning Outcomes: </strong>The tree map, at least in the Urban Forest class, turned out to be a good introduction to mapping for students without any GIS or Geography experience. In addition, Tim considers ArcPad a valuable learning resource; he sees it as ArcMap Lite, with much less of a learning curve than ArcView.</p>
<p><strong>Description:</strong> The tree map of the campus was started years ago as a student project (see the Geography Department&#8217;s <a href="http://www.middlebury.edu/academics/geog/student_faculty_research/student_projects" target="_blank">Student Projects page</a>).  Tim picked up the project again in 2006. After successfully applying for an environmental grant for the hardware, Tim went out in the field to verify and correct the trees that had been identified and add more. With help from the Geography Department and LIS, Tim created a map in ArcGIS which included attributes such as sizes and health status of the trees.</p>
<p>Tim maintains and updates the map and accompanying file geodatabase as the campus landscape changes. Meanwhile, he also has exported the map from ArcView to Google Earth using a free ArcGIS add-on called Export to KML. He plans to revise his ArcPad  data collection forms so that they are are more specific to plant care needs.</p>
<p>The project has evolved through time. Last fall, Tim worked with students in a Plant Biology class. They mapped about half of the Bread Loaf campus trees, and he hopes to finish that project next fall. Tim&#8217;s future plan is to establish a virtual tree tour online, either with Google Earth or a static map.</p>
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		<title>Middlebury Trailrunner Blog &#8211; Jeff Byers</title>
		<link>http://sites.middlebury.edu/teachwithtech/2010/05/13/middlebury-trailrunner-blog-jeff-byers/</link>
		<comments>http://sites.middlebury.edu/teachwithtech/2010/05/13/middlebury-trailrunner-blog-jeff-byers/#comments</comments>
		<pubDate>Thu, 13 May 2010 15:07:54 +0000</pubDate>
		<dc:creator>Carrie Macfarlane</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Economics]]></category>
		<category><![CDATA[Environmental Studies]]></category>
		<category><![CDATA[Geography]]></category>
		<category><![CDATA[Geology]]></category>
		<category><![CDATA[Political Science]]></category>
		<category><![CDATA[blogs]]></category>
		<category><![CDATA[Google Earth]]></category>
		<category><![CDATA[Google Maps]]></category>
		<category><![CDATA[GPS]]></category>

		<guid isPermaLink="false">http://sites.middlebury.edu/teachwithtech/?p=407</guid>
		<description><![CDATA[What: Middlebury Trailrunner Blog Who: Jeff Byers, Professor of Chemistry and Biochemistry Technologies used: Hardware: GPS watch, digital camera.  Software:  Google Earth, WordPress, Garmin software (allows seamless connection to Google Earth). When posting an altitude profile, Jeff does a screen &#8230; <a href="http://sites.middlebury.edu/teachwithtech/2010/05/13/middlebury-trailrunner-blog-jeff-byers/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
				<content:encoded><![CDATA[<p><a href="http://sites.middlebury.edu/teachwithtech/files/2010/05/middlebury-maple.jpg"><img class="alignright size-thumbnail wp-image-426" title="middlebury-maple" src="http://sites.middlebury.edu/teachwithtech/files/2010/05/middlebury-maple-150x150.jpg" alt="middlebury-maple" width="150" height="150" /></a><strong>What: </strong> <a href="http://sites.middlebury.edu/trailrunner/" target="_blank">Middlebury Trailrunner Blog</a></p>
<p><strong>Who: </strong> Jeff Byers, Professor of Chemistry and Biochemistry</p>
<p><strong>Technologies used: </strong> Hardware: GPS watch, digital camera.  Software:  Google Earth, WordPress, Garmin software (allows seamless connection to Google Earth). When posting an altitude profile, Jeff does a screen shot off of the Garmin software and pastes it into MS Word.  Then he uses a shareware program called &#8220;Doc to Jpeg Converter&#8221; and crops it with Microsoft Office Picture Manager.<span id="more-407"></span></p>
<p><strong>Assistance received:</strong> Not much was needed!  Jeff figured this out by himself, while watching the Red Sox on summer evenings.   He has had conversations with Joe Antonioli (Manager of Web &amp; Interactive Digital Media Technologies), and Carrie Macfarlane (LIS liaison) about getting an analytics tool installed (technical issues are still being resolved).  The <a href="http://www.addisonindependent.com/201004middlebury-trailrunner-tale-two-weekends" target="_blank"><em>Addison Independent</em></a> rebroadcasts the blog from their newspaper web site.</p>
<p><strong>Reason for using the technology:</strong> Personal interest</p>
<p><strong>Description: </strong> Jeff created the Middlebury Trailrunner blog as a community resource for like-minded runners.  Jeff and other runners felt there was a need for a local guide; he often found himself describing his routes to his friends.  He also thought it would be fun to create the blog&#8211;he is a self-described &#8220;map geek.&#8221;</p>
<p>The blog tracks Jeff&#8217;s trail-running adventures in and around Addison County.  For each run, Jeff posts a map of his route, a chart showing the altitudes he reached, photos and a written narrative.</p>
<p>Running is just a hobby for Jeff, but these technologies have potential curricular applications, from biology and environmental studies, to writing, to art (see for example <a href="http://www.nytimes.com/2009/08/20/fashion/20GPS.html" target="_blank">The Big Draw of the GPS Run</a>!).</p>
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		<title>Wireless Projection &#8211; Chris Watters</title>
		<link>http://sites.middlebury.edu/teachwithtech/2010/04/15/wireless-projection-chris-watters/</link>
		<comments>http://sites.middlebury.edu/teachwithtech/2010/04/15/wireless-projection-chris-watters/#comments</comments>
		<pubDate>Thu, 15 Apr 2010 19:18:52 +0000</pubDate>
		<dc:creator>Carrie Macfarlane</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Discussion]]></category>
		<category><![CDATA[presentation]]></category>
		<category><![CDATA[video]]></category>
		<category><![CDATA[wireless]]></category>

		<guid isPermaLink="false">http://sites.middlebury.edu/teachwithtech/?p=350</guid>
		<description><![CDATA[Technology used: Wireless Video Presentation System II by BlackBox Course: BIOL0222A Human Nutrition from an Evolutionary Perspective (Winter 2010) Reason for using the technology: This was a seminar course, and Chris wanted students to be able to present from their &#8230; <a href="http://sites.middlebury.edu/teachwithtech/2010/04/15/wireless-projection-chris-watters/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
				<content:encoded><![CDATA[<p><strong><a href="http://sites.middlebury.edu/teachwithtech/files/2010/04/ChrisWatters003-cropped.jpg"><img class="size-thumbnail wp-image-352 alignleft" style="margin: 10px" title="ChrisWatters003-cropped" src="http://sites.middlebury.edu/teachwithtech/files/2010/04/ChrisWatters003-cropped-150x150.jpg" alt="ChrisWatters003-cropped" width="150" height="150" /></a>Technology used: </strong> Wireless Video Presentation System II by BlackBox<br />
<strong>Course: </strong>BIOL0222A Human Nutrition from an Evolutionary Perspective (Winter 2010)<br />
<strong>Reason for using the technology: </strong> This was a seminar course, and Chris wanted students to be able to present from their own laptops.<br />
<strong>Received assistance from:</strong> LIS HelpDesk and Media Services</p>
<p>The BlackBox Wireless Video Presentation System allowed the nine students in Professor Chris Watters&#8217; Human Nutrition class to share their work as peers rather than as presenters at a podium.  Discussion continued seamlessly through PowerPoint presentations that students ran from their own laptops.</p>
<p>Chris can envision other uses for this technology, including collaboration and peer review, and more simply, large projector presentations.  He first saw the BlackBox server in action at an international visualization conference in 2005.  A group would demonstrate a project, take feedback, make revisions, and present again.  When Chris learned that the server was available in the US, he mentioned it to Dean Cadoret.  Dean found the server and helped configure it with other LIS staff.</p>
<p>Full configuration remained difficult despite adjustments to the server, the network, and even the students&#8217; laptops.  Some of Chris&#8217; objectives couldn&#8217;t be met (he had hoped students would be able to pull up nutrition web pages and evaluate them as a group), but overall Chris found this experiment with new technology worthwhile.</p>
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